species:   Rhsol
pid:       PID0476
parent:    Rhi-milR-74
paralog:   
locus:     KB317706.1:133332-133418
matures:   ['GCCGAGGCGAAGGCUGACAC', 'GUUGACCUCGCCUUGCCAU']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317706.1:133332-133418

0 out of bounds
24 alignments
24 proper strand
24 stranded perfect matches

     ***************************                      ****************************     
UUUAUUGUGGGUGUUGACCUCGCCUUGCCAUGCGUUGCGGUGGAUGCCGCGCUGCAUGCCGAGGCGAAGGCUGACACCCGUUGUCAC
........((((((((.((((((((((.((((((.((((((....)))))).)))))).))))))).))).))))))))........
---------------------------------------------------------GCCGAGGCGAAGGCUGACAC---------- l=20 a=1 c
------------GUUGACCUCGCCUUGCCAU-------------------------------------------------------- l=19 a=0 c*
--------------------------------------------------------UGCCGAGGCGAAGGCUGACACCCGUU----- l=26 a=13 ma
-------UGGGUGUUGACCUCGCCUUGCCAUG------------------------------------------------------- l=25 a=0 ma*

---------------------------------------------------------GCCGAGGCGAAGGCUGACAC---------- l=20 a=1 (c)
--------------------------------------------------------UGCCGAGGCGAAGGCUGACA----------- l=20 a=1 
--------------------------------------------------------UGCCGAGGCGAAGGCUGACAC---------- l=21 a=1 
--------------------------------------------------------UGCCGAGGCGAAGGCUGACACCCG------- l=24 a=1 
--------------------------------------------------------UGCCGAGGCGAAGGCUGACACCCGU------ l=25 a=1 
--------------------------------------------------------UGCCGAGGCGAAGGCUGACACCCGUU----- l=26 a=13 (ma)
--------------------------------------------------------UGCCGAGGCGAAGGCUGACACCCGUUG---- l=27 a=6 

mb-01011
ax-1011101
ku-01
ss-101011101110
fn-111
